Sorry... I was busy... The problem is that there are not many documents available on that subject :-/
But I can confirm that any changes in CMOD are really not well digested by CFS-OD...
If they do what I think they do... then the link is something to do with the internal doc id from CMOD... and if that the case, then you'll have a lot of internal definition of objects in CMOD, like the internal ID for the AG and APP and also the table where the row is located in CMOD.
And this is not something that should be stored somewhere, because of the changes that can be done, you can break the link between this internal doc id, and the actual index.
This is only speculation... I have really no idea how CFS-OD works internally... but I really really hope they didn't use the internal CMOD doc_id... because if that's the case... then ... the link can be broken easily with any changes...
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Alessandro