Hi Shannan.
First things first: I don't generally recommend intermixing CMOD with other servers. It's possible to run both on the same system, but when CMOD (or your CM system) gets too big and you need to migrate to a new system, it's chaotic. Virtual Machines (in the Windows or Linux world) or LPARs (in the AIX world) are an exception, because they're easily portable to new hardware. That having been said...
You'll need to come up with your own TSM definitions to match your specific requirements. The guide is a good start, but keep the following tips in mind:
Create a new Storage Set for EACH Application Group in CMOD.
Each Storage Set should have it's OWN Domain, Policy, Management Class, and node definitions inside TSM.
The reason for this is that sometimes the requirements for the retention of documents change -- and when you bundle a number of AGs into a single Storage Set, if you're required to change the retention for one, ALL of the other AGs will be affected. (And sometimes having data for longer than you should is worse than not having it when you should.)
Don't hesitate to ask more questions as you work your way through this!
-JD.